[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 52 items for (author: chipman & pr)

EMDB-6168:
Structure of Enteric Pathogen Bovine Parvovirus
Method: single particle / : Kailasan S, Halder S, Gurda B, Bladek H, Chipman PR, McKenna R, Brown K, Agbandje-McKenna M

EMDB-5296:
cryo-EM reconstruction of West Nile virus
Method: single particle / : Zhang W, Kaufmann B, Chipman PR, Kuhn RJ, Rossmann MG

EMDB-5378:
The structure of PBCV-1 (icosahedrally averaged map)
Method: single particle / : Zhang XZ, Xiang Y, Dunigan DD, Klose T, Chipman PR, Etten JLV, Rossmann MG

EMDB-5384:
The structure of PBCV-1 (five-fold averaged map)
Method: single particle / : Zhang XZ, Xiang Y, Dunigan DD, Klose T, Chipman PR, Etten JLV, Rossmann MG

EMDB-5385:
The structure of PBCV-1 (local symmetry averaged map of major capsid protein)
Method: single particle / : Zhang XZ, Xiang Y, Dunigan DD, Klose T, Chipman PR, Etten JLV, Rossmann MG

EMDB-2056:
Electron cryo-microscopy of the Hantaan virus glycoprotein spike
Method: single particle / : Battisti AJ, Chu YK, Chipman PR, Kaufmann B, Jonsson CB, Rossmann MG

EMDB-5190:
West Nile Virus in complex with Fab fragments of the neutralizing monoclonal antibody CR4354
Method: single particle / : Kaufmann B, Vogt MR, Holdaway HA, Goudsmit J, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG

EMDB-5179:
The Interaction of Decay-accelerating Factor with Echovirus 7
Method: single particle / : PLEVKA P, HAFENSTEIN S, ZHANG Y, HARRIS KG, CIEFUENTE JO, BOWMAN VD, CHIPMAN PR, LIN F, MEDOF DE, BATOR CM, ROSSMANN MG

EMDB-5115:
West Nile virus in complex with a single-chain antibody derivative of the neutralizing monoclonal antibody E16
Method: single particle / : Kaufmann B, Chipman PR, Holdaway HA, Johnson S, Kuhn RJ, Diamond MS, Rossmann MG

EMDB-5117:
Structure of furin-cleaved immature dengue virus at low pH
Method: single particle / : Yu I, Holdaway HA, Chipman PR, Kuhn RJ, Rossmann MG, Chen J

EMDB-5106:
Fab from MAb B interacting with feline panleukopenia virus
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-5107:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb 6
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-5108:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb 8
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-5109:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb 15
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-5110:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb 16
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-5111:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-5112:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb F
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-5102:
Immature Dengue Virus (DENV) in complex with Fab fragments of the anti-fusion loop antibody E53
Method: single particle / : Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH

EMDB-5103:
Immature West Nile Virus (WNV) in complex with Fab fragments of the anti-fusion loop antibody E53
Method: single particle / : Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH

EMDB-1597:
5-fold averaged density map of Paramecium bursaria Chlorella virus-1 (PBCV-1).
Method: single particle / : Cherrier MV, Kostyuchenko VA, Xiao C, Bowman VD, Battisti AJ, Yan X, Chipman PR, Baker TS, Van Etten JL, Rossmann MG

EMDB-5039:
Cryo-EM reconstruction of the giant Mimivirus using C5 symmetry
Method: single particle / : Xiao C, Kuznetsov YG, Sun S, Hafenstein SL, Kostyuchenko VA, Chipman PR, Suzan-Monti M, Raoult D, McPherson A, Rossmann MG

EMDB-5006:
Structure of immature Dengue virus at low pH
Method: single particle / : Yu I, Zhang W, Holdaway HA, Li L, Kostyuchenko VA, Chipman PR, Kuhn RJ, Rossmann MG, Chen J

EMDB-5105:
Canine parvovirus in complex with FAb from neutralizing antibody MAb 14
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CDS, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

EMDB-1580:
CryoEM and 3D image reconstruction of Chilo Iridescent virus at 13 angstrom resolution
Method: single particle / : Yan X, Yu Z, Zhang P, Battisti AJ, Holdaway HA, Chipman PR, Bajaj C, Bergoin M, Rossmann MG, Baker TS

EMDB-1466:
Human Parvovirus B19 (DNA-containing wildtype)
Method: single particle / : Kaufmann B, Chipman PR, Modrow S, Rossmann MG

EMDB-1467:
Human Parvovirus B19 (empty wildtype particle)
Method: single particle / : Kaufmann B, Chipman PR, Modrow S, Rossmann MG

EMDB-1468:
Virus-like particle of Human Parvovirus B19 (VLP consisting of VP2 only)
Method: single particle / : Kaufmann B, Chipman PR, Modrow S, Rossmann MG

EMDB-1418:
Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins
Method: single particle / : Lok SM

EMDB-1326:
Minute virus of mice, a parvovirus, in complex with the Fab fragment of a neutralizing monoclonal antibody.
Method: single particle / : Kaufmann B, Lopez-Bueno A, Garcia-Mateu M, Chipman PR, Nelson CDS, Parrish CR, Almendral JM, Rossmann MG

EMDB-1280:
Cryo-electron microscopy study of bacteriophage T4 displaying anthrax toxin proteins.
Method: single particle / : Fokine A, Bowman VD, Battisti AJ, Li Q, Chipman PR, Rao VB, Rossmann MG

EMDB-1393:
Cryo-EM study of the Pseudomonas bacteriophage phiKZ.
Method: single particle / : Fokine A, Battisti A, Bowman V, Efimov A, Kurochkina L, Chipman P, Mesyanzhinov V, Rossmann M

EMDB-1392:
A three-dimensional cryo-electron microscopy structure of the bacteriophage phiKZ head.
Method: single particle / : Fokine A, Kostyuchenko V, Efimov A, Kurochkina L, Sykilinda N, Robben J, Volckaert G, Hoenger A, Chipman P, Battisti A, Rossmann M, Mesyanzhinov V

EMDB-1415:
Cryo-EM study of the Pseudomonas bacteriophage phiKZ.
Method: single particle / : Fokine A, Battisti A, Bowman V, Efimov A, Kurochkina L, Chipman P, Mesyanzhinov V, Rossmann M

EMDB-1414:
Molecular architecture of the prolate head of bacteriophage T4.
Method: single particle / : Fokine A, Chipman P, Leiman P, Mesyanzhinov V, Rao V, Rossmann M

EMDB-1411:
Interaction of decay-accelerating factor with coxsackievirus B3.
Method: single particle / : Hafenstein S

EMDB-1412:
Interaction of decay-accelerating factor with coxsackievirus B3.
Method: single particle / : Hafenstein S

EMDB-1314:
Structure of immature West Nile virus.
Method: single particle / : Zhang Y, Kaufmann B, Chipman PR, Kuhn RJ, Rossmann MG

EMDB-1287:
Asymmetric binding of transferrin receptor to parvovirus capsids.
Method: single particle / : Hafenstein S, Palermo LM, Xiao C, Kostyuchenko VA, Morais M, Nelson CDS, Chipman PR, Bowman VD, Battisti AJ, Parrish CR, Rossmann MG

EMDB-1288:
Asymmetric binding of transferrin receptor to parvovirus capsids.
Method: single particle / : Hafenstein S, Palermo LM, Xiao C, Kostyuchenko VA, Morais M, Nelson CDS, Chipman PR, Bowman VD, Battisti AJ, Parrish CR, Rossmann MG

EMDB-1234:
West Nile virus in complex with the Fab fragment of a neutralizing monoclonal antibody.
Method: single particle / : Kaufmann B, Nybakken GE, Chipman PR, Zhang W, Diamond MS, Fremont DH, Kuhn RJ, Rossmann MG

EMDB-1166:
Cryo-EM reconstruction of dengue virus in complex with the carbohydrate recognition domain of DC-SIGN.
Method: single particle / : Pokidysheva E, Zhang Y, Battisti AJ, Bator-Kelly CM, Chipman PR, Xiao C, Gregorio GG, Hendrickson WA, Kuhn RJ, Rossmann MG

EMDB-1167:
Cryo-EM reconstruction of dengue virus in complex with the carbohydrate recognition domain of DC-SIGN.
Method: single particle / : Pokidysheva E, Zhang Y, Battisti AJ, Bator-Kelly CM, Chipman PR, Xiao C, Gregorio GG, Hendrickson WA, Kuhn RJ, Rossmann MG

EMDB-1121:
Mapping the structure and function of the E1 and E2 glycoproteins in alphaviruses.
Method: single particle / : Mukhopadhyay S, Zhang W, Gabler S, Chipman PR, Strauss EG, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG

EMDB-1126:
The tail structure of bacteriophage T4 and its mechanism of contraction.
Method: single particle / : Kostyuchenko VA, Chipman PR, Leiman PG, Arisaka F, Mesyanzhinov VV, Rossmann MG

EMDB-1114:
The crystal structure of coxsackievirus A21 and its interaction with ICAM-1.
Method: single particle / : Xiao C, Bator-Kelly CM, Rieder E, Chipman PR, Craig A, Kuhn RJ, Wimmer E, Rossmann MG

EMDB-1116:
Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.
Method: single particle / : Morais MC, Choi KH, Chipman PR, Anderson DL, Rossmann MG

EMDB-1117:
Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.
Method: single particle / : Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG

EMDB-1120:
Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.
Method: single particle / : Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG

EMDB-1086:
Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host.
Method: single particle / : Leiman PG, Chipman PR, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG

EMDB-1089:
Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host.
Method: single particle / : Leiman PG, Chipman PR, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more